A-1 - Encouraged by What You Read?

I expected to get a reaction—and I did.

Last week I posted the below “meme” on my Facebook page and Twitter account, claiming that the evolutionary paradigm is unfalsifiable because of the stranglehold that methodological naturalism has on the operation of science.


And of course, it elicited a rather negative reaction by at least one atheist who listed a number of ways to falsify biological evolution, delineated by evolutionary biologist Jerry Coyne.

So, is biological evolution falsifiable? Was it unwarranted on my part to claim that biological evolution is unfalsifiable? Am I “full of it,” as this skeptic asserted?

My response: In principle, chemical and biological evolution are falsifiable, as are all scientific theories. But in reality, the evolutionary paradigm is unfalsifiable—because of the influence of methodological naturalism.

In effect, methodological naturalism restricts the available explanations for the universe and phenomena within the universe, such as the origin and history of life. Certain explanations are off the table, a priori. As a consequence, intelligent design/creationism cannot be part of the construct of science.

The Effect of Methodological Naturalism on Scientific Inquiry

Methodological naturalism provides the philosophical framework for science. This concept is distinct yet related to philosophical naturalism. According to philosophical naturalism, all that exists is the material, physical universe. There is no supernatural. There is no reality outside of the universe itself. There is no God. As the late astronomer Carl Sagan once quipped, “The cosmos is all that is, or ever was, or ever will be.” 

In contradistinction to philosophical naturalism, methodological naturalism claims to be metaphysically neutral on the question of God’s existence. According to the tenets of methodological naturalism, when one engages in the scientific enterprise, it is necessary to suspend belief in God, regardless of one’s personal convictions. The only allowed explanations for the universe and phenomena within the universe are natural process, mechanistic explanations. One cannot appeal to the supernatural. But that doesn’t mean the supernatural doesn’t exist. Simply put, the supernatural is not given a place in the scientific project.

In other words, if you believe that God exists, your views cannot influence the way in which you conduct science. Methodologically speaking, you must function as if God does not exist. Sometimes methodological naturalism is called provisional atheism or benchtop atheism. This restriction makes methodological naturalism functionally equivalent to philosophical naturalism, rendering science an inherently atheistic enterprise, though, again, its practitioners may well believe God exists.

In effect, methodological naturalism restricts the available explanations for the universe and phenomena within the universe, such as the origin and history of life. Certain explanations are off the table, a priori. As a consequence, intelligent design/creationism cannot be part of the construct of science. Any explanation that states an intelligent Agent is responsible for, say, the origin of life is prohibited. As a result, chemical and biological evolution are the only available alternatives for someone who’s trying to scientifically account for the origin and history of life.

The net effect is this: Chemical and biological evolution are true by default, regardless of the evidence at hand. No matter how much evidence exists challenging the evolutionary paradigm, it cannot be supplanted because there is no other alternative explanation that is allowed.

A Failed Prediction for the Evolutionary Paradigm

As it turns out, discordant phylogenies plague evolutionary biologists. . . . On this basis alone, one could conclude that the evolutionary paradigm has been falsified.

As an illustration of this point, consider one of the ways that Jerry Coyne thinks biological evolution can be falsified:

Complete discordance between phylogenies based on morphology/fossils and on DNA. While individual genes can show discordance by lateral transfer—rotifers, for example, have incorporated into their genome from DNA from very unrelated organisms, and this is also common for bacteria. But lateral transfer of genes, as opposed to their direct descent from parent to offspring, is relatively uncommon. So, for example, if we sequenced the genome of a blue whale and found that on the whole the species was more closely related to fish than to mammals, we’d have a serious problem for the theory of evolution.

Coyne’s prediction is similar to one made by the late evolutionary biologist Morris Goodman. According to Goodman, one of the founders of the discipline of molecular anthropology:

If the biblical account of creation were true, then independent features of morphology, proteins, and DNA sequences would not be expected to be congruent with each other. Chaotic patterns, with different proteins and different DNA sequences failing to indicate any consistent set of species relationships, would contradict the theory of evolution.1

As it turns out, discordant phylogenies plague evolutionary biologists. It is not uncommon for evolutionary trees built from morphological features to disagree with evolutionary trees built from DNA sequence data. Again, it is not uncommon for molecular phylogenies to disagree with one another when constructed using different regions of the genome. (For examples, see the articles listed under the resource section below.) On this basis alone, one could conclude that the evolutionary paradigm has been falsified—or at minimum, one would be justified to express skepticism about the capacity of the evolutionary paradigm to account for the origin, history, and design of life.

Again, these are not predictions made by intelligent design proponents or creationists. These are predictions made by evolutionary biologists, both of whom are (or were) skeptics. And on the basis of these predictions, the evolutionary paradigm has failed.

But Wait—Not So Fast

How do evolutionary biologists respond to the pervasive problem of discordant phylogenies?

They argue that the discordance can be dismissed because morphological data is an unreliable indicator of evolutionary history. How do they know this is the case? They know because morphological and molecular phylogenies disagree.

Or they claim that the discordance results from incomplete lineage sorting. How do they know incomplete lineage sorting has occurred? They know because evolutionary trees built using different genes (or genomic regions) disagree.

Another way evolutionary biologists dismiss the discordant trees is to assert that some regions of the genomes are phylogenetically uninformative. That is, these regions of the genome don’t issue a phylogenetically reliable signal. How do evolutionary biologists know this to be the case? They know because evolutionary trees built from certain regions of the genome don’t yield the expected results—and consequently, produce discordant phylogenies.

These responses are classical instances of circular reasoning. In effect, evolutionary biologists are using discordant evolutionary trees as a way to explain why discordant evolutionary trees result when they attempt to build phylogenies using different data sets.

Is Evolution Falsifiable?

Why the circular reasoning? It is because if one adheres to methodological naturalism, the only valid scientific explanation for the origin and history of life is through some type of evolutionary process. Evolution must be true by default. Why? It must be true because if the evolutionary paradigm is falsified, then the only other alternative is intelligent design/creationism. And this approach to biology is prohibited, a priori, because of philosophical commitments to a materialistic approach to the life sciences. This state of affairs can only lead to tautologies when failed predictions arise, though the tautologies are draped in scientific jargon.

So, is biological evolution falsifiable? Yes, in principle. But no, in reality.

I suspect that when evolutionary biologists list “if-they-are-true” observations that would disprove biological evolution, it doesn’t mean they are necessarily willing to consider another paradigm—because if they were, they would readily see the evolutionary paradigm’s many shortcomings.



  1. Morris Goodman, “Reconstructing Human Evolution from Proteins,” chap. 8.4 in The Cambridge Encyclopedia of Human Evolution, ed. Steve Jones et al. (New York: Cambridge University Press, 1993), 307–13.

Subjects: Creation vs. Evolution, Evolution, Intelligent Design

Check out more from Reasons to Believe @Reasons.org

About The Author

Dr. Fazale Rana

I watched helplessly as my father died a Muslim. Though he and I would argue about my conversion, I was unable to convince him of the truth of the Christian faith. I became a Christian as a graduate student studying biochemistry. The cell's complexity, elegance, and sophistication coupled with the inadequacy of evolutionary scenarios to account for life's origin compelled me to conclude that life must stem from a Creator. Reading through the Sermon on the Mount convinced me that Jesus was who Christians claimed Him to be: Lord and Savior. Still, evangelism wasn't important to me - until my father died. His death helped me appreciate how vital evangelism is. It was at that point I dedicated myself to Christian apologetics and the use of science as a tool to build bridges with nonbelievers. In 1999, I left my position in R&D at a Fortune 500 company to join Reasons to Believe because I felt the most important thing I could do as a scientist is to communicate to skeptics and believers alike the powerful scientific evidence - evidence that is being uncovered day after day - for God's existence and the reliability of Scripture. [...] I dedicated myself to Christian apologetics and the use of science as a tool to build bridges with nonbelievers. Fazale "Fuz" Rana discovered the fascinating world of cells while taking chemistry and biology courses for the premed program at West Virginia State College (now University). As a presidential scholar there, he earned an undergraduate degree in chemistry with highest honors. He completed a PhD in chemistry with an emphasis in biochemistry at Ohio University, where he twice won the Donald Clippinger Research Award. Postdoctoral studies took him to the Universities of Virginia and Georgia. Fuz then worked seven years as a senior scientist in product development for Procter & Gamble.

Email Sign-up

Access updates, news, Biblical teaching and inspirational messaging from the world's most powerful Christian voices.

Thank you for signing up to receive updates from TWR360.

Required information missing